retrotransposon_evolution: Simulates the evolution of a family of sequences by taking...

In sams25/rcombinator_old: Tools to Simulate the Evolution of Genetic Sequences

Description

Simulates the evolution of a family of sequences by taking into consideration both point mutation and burst events

Usage

retrotransposon_evolution(timestep, final_time, initial_sequences,
  mutation_function, copy_numbers, recombination_function, dist_function,
  num_seq_dumps, num_summary_dumps, num_pairmatrix_dumps)

Arguments

timestep	The size of the timesteps of jumps
final_time	The time to simulate until
initial_sequences	The original sequences to begin with
mutation_function	How to apply point mutations
copy_numbers	The copy numbers for the sequences over time
recombination_function	How to recombine sequences
dist_function	How to recombine sequences

Value

A list of sequences that have evolved over time with both point mutation and recombination

sams25/rcombinator_old documentation built on May 28, 2019, 8:40 a.m.