simulate_burst_evolution: Simulates the evolution of a family of sequences by taking...

In sams25/rcombinator_old: Tools to Simulate the Evolution of Genetic Sequences

Description

Simulates the evolution of a family of sequences by taking into consideration both point mutation and burst events

Usage

simulate_burst_evolution(sequences, timestep, final_time, transition_matrix,
  burst_probability, burst_mean, max_copy_number, recombination_rate,
  dist_method, num_matrix_dumps = 0, num_seq_dumps = 0)

Arguments

sequences	The original sequences to begin with
timestep	The size of the timesteps of jumps
final_time	The time to simulate until
burst_mean	The mean (for a Poisson distribution) increase in copy number during a burst event
get_transition_matrix	The transition matrix for the point mutations
burst_threshhold	The probability of a burst even occurring

Value

A list of sequences that have evolved over time with both point mutation and recombination

sams25/rcombinator_old documentation built on May 28, 2019, 8:40 a.m.