simulate_bursts: Simulate the increase in copy numbers of sequences

In sams25/rcombinator_old: Tools to Simulate the Evolution of Genetic Sequences

Description

Simulate the increase in copy numbers of sequences

Usage

simulate_bursts(sequence_counts, num_jumps, burst_threshhold, burst_choice)

Arguments

sequence_counts	The distribution of copy numbers of the sequences
num_jumps	The number of time steps this simulation goes across
burst_choice	A choice of how to select the sequence to burst "parameters" - takes the probabilities assigned to sequence_counts "equal" - gives each family the same weightage "accumulate" - weighs a sequence in proportion to its copy number
burst_probability	The probability of a burst event occurring

Value

A data frame of sequence counts with respect to time

sams25/rcombinator_old documentation built on May 28, 2019, 8:40 a.m.