simulate_point_mutation_markov: The Markov chain simulation for point mutations on a list of...
In sams25/rcombinator_old: Tools to Simulate the Evolution of Genetic Sequences
Description
Usage
Arguments
Value
Description
The Markov chain simulation for point mutations on a list of sequences
Usage
1
2
3
simulate_point_mutation_markov(sequences, num_jumps,
transition_matrix = get_k80_matrix(10^6), dist_method = "levenshtein",
save_sequences = FALSE, save_file = NULL)
Arguments
sequences
A list of nucleic acid sequences
num_jumps
The number of steps to simulate the point mutations for
transition_matrix
The transition matrix coressponding to the model we are using
for point mutations
Value
A data frame with a list of times and the mutated sequences at each time
sams25/rcombinator_old documentation built on May 28, 2019, 8:40 a.m.
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Description Usage Arguments Value
Description
The Markov chain simulation for point mutations on a list of sequences
Usage
1 2 3 | simulate_point_mutation_markov(sequences, num_jumps,
transition_matrix = get_k80_matrix(10^6), dist_method = "levenshtein",
save_sequences = FALSE, save_file = NULL)
|
Arguments
sequences |
A list of nucleic acid sequences |
num_jumps |
The number of steps to simulate the point mutations for |
transition_matrix |
The transition matrix coressponding to the model we are using for point mutations |
Value
A data frame with a list of times and the mutated sequences at each time
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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