Add_CellBender_Diff: Calculate and add differences post-cell bender analysis

In samuel-marsh/scCustomize: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing

Calculate and add differences post-cell bender analysis

Description

Calculate the difference in features and UMIs per cell when both cell bender and raw assays are present.

Usage

Add_CellBender_Diff(seurat_object, raw_assay_name, cell_bender_assay_name)

Arguments

seurat_object	object name.
raw_assay_name	name of the assay containing the raw data.
cell_bender_assay_name	name of the assay containing the Cell Bender'ed data.

Value

Seurat object with 2 new columns in the meta.data slot.

Examples

## Not run: 
object <- Add_CellBender_Diff(seurat_object = obj, raw_assay_name = "RAW",
cell_bender_assay_name = "RNA")

## End(Not run)

samuel-marsh/scCustomize documentation built on Dec. 20, 2024, 7:41 a.m.