Case_Check: Check for alternate case features

In samuel-marsh/scCustomize: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing

Check for alternate case features

Description

Checks Seurat object for the presence of features with the same spelling but alternate case.

Usage

Case_Check(
  seurat_object,
  gene_list,
  case_check_msg = TRUE,
  return_features = TRUE,
  assay = NULL
)

Arguments

seurat_object	Seurat object name.
gene_list	vector of genes to check.
case_check_msg	logical. Whether to print message to console if alternate case features are found in addition to inclusion in returned list. Default is TRUE.
return_features	logical. Whether to return vector of alternate case features. Default is TRUE.
assay	Name of assay to pull feature names from. If NULL will use the result of DefaultAssay(seurat_object).

Value

If features found returns vector of found alternate case features and prints message depending on parameters specified.

Examples

## Not run: 
alt_features <- Case_Check(seurat_object = obj_name, gene_list = DEG_list)

## End(Not run)

samuel-marsh/scCustomize documentation built on Dec. 20, 2024, 7:41 a.m.