DotPlot_scCustom: Customized DotPlot

In samuel-marsh/scCustomize: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing

Customized DotPlot

Description

Code for creating customized DotPlot

Usage

DotPlot_scCustom(
  seurat_object,
  features,
  group.by = NULL,
  colors_use = viridis_plasma_dark_high,
  remove_axis_titles = TRUE,
  x_lab_rotate = FALSE,
  y_lab_rotate = FALSE,
  facet_label_rotate = FALSE,
  flip_axes = FALSE,
  ...
)

Arguments

seurat_object	Seurat object name.
features	Features to plot.
group.by	Name of metadata variable (column) to group cells by (for example, orig.ident); default is the current active.ident of the object.
colors_use	specify color palette to used. Default is viridis_plasma_dark_high.
remove_axis_titles	logical. Whether to remove the x and y axis titles. Default = TRUE.
x_lab_rotate	Rotate x-axis labels 45 degrees (Default is FALSE).
y_lab_rotate	Rotate x-axis labels 45 degrees (Default is FALSE).
facet_label_rotate	Rotate facet labels on grouped DotPlots by 45 degrees (Default is FALSE).
flip_axes	whether or not to flip and X and Y axes (Default is FALSE).
...	Extra parameters passed to DotPlot.

Value

A ggplot object

Examples

library(Seurat)
DotPlot_scCustom(seurat_object = pbmc_small, features = c("CD3E", "CD8", "GZMB", "MS4A1"))

samuel-marsh/scCustomize documentation built on Dec. 20, 2024, 7:41 a.m.