ensembl_ieg_list: Immediate Early Gene (IEG) gene lists

ensembl_ieg_listR Documentation

Immediate Early Gene (IEG) gene lists

Description

Ensembl IDs for immediate early genes (Ensembl version 112; 4/29/2024)

Usage

ensembl_ieg_list

Format

A list of seven vectors

Mus_musculus_IEGs

Ensembl IDs for IEGs from source publication (see below)

Homo_sapiens_IEGs

Ensembl IDs for homologous genes from mouse gene list

Source

Mouse gene list is from: SI Table 4 from \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1016/j.neuron.2017.09.026")}. Human gene list was compiled by first creating homologous gene list using biomaRt and then adding some manually curated homologs according to HGNC. See data-raw directory for scripts used to create gene list.


samuel-marsh/scCustomize documentation built on Dec. 20, 2024, 7:41 a.m.