getDistanceAll: Fonction that calculates every shortest distances between...
In sandraTL/PADIGM: Pathway Analysis with distance between genes and metablites
Description
Usage
Arguments
Details
Examples
Description
The igrpah created to simulate the KEGG pathways as metabolties as nodes
and genes (related gene enzymes and reaction) as egdes.
Usage
1
getDistanceAll(pathwayId, associatedGeneMetaDF, completeMetaboliteDF)
Arguments
data(gene,
metabolites )
Details
The shortest distance is taking from calculation from both vertices related
to a gene to the metabolites of interest.
for param data:
gene = KEGGid of gene hsa:...
metabolites : KEGGid of metabolites C....
for param pathwayId : KEGG id of pathways without ':' ex: hsa01100
Examples
1
getDistanceAll(pathwayId, data)
sandraTL/PADIGM documentation built on May 29, 2019, 1:45 p.m.
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Description Usage Arguments Details Examples
Description
The igrpah created to simulate the KEGG pathways as metabolties as nodes and genes (related gene enzymes and reaction) as egdes.
Usage
1 | getDistanceAll(pathwayId, associatedGeneMetaDF, completeMetaboliteDF)
|
Arguments
data(gene, |
metabolites ) |
Details
The shortest distance is taking from calculation from both vertices related to a gene to the metabolites of interest.
for param data: gene = KEGGid of gene hsa:... metabolites : KEGGid of metabolites C.... for param pathwayId : KEGG id of pathways without ':' ex: hsa01100
Examples
1 | getDistanceAll(pathwayId, data)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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