Description Usage Arguments Details Examples
The igrpah created to simulate the KEGG pathways as metabolties as nodes and genes (related gene enzymes and reaction) as egdes.
1 | getDistanceAll(pathwayId, associatedGeneMetaDF, completeMetaboliteDF)
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data(gene, |
metabolites ) |
The shortest distance is taking from calculation from both vertices related to a gene to the metabolites of interest.
for param data: gene = KEGGid of gene hsa:... metabolites : KEGGid of metabolites C.... for param pathwayId : KEGG id of pathways without ':' ex: hsa01100
1 | getDistanceAll(pathwayId, data)
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