Files in sandraTL/PADIGM
Pathway Analysis with distance between genes and metablites
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
Examples.Rmd
Examples.docx
Examples.html
GLS2.png
NAMESPACE
PADIGM.Rproj
R/.Rapp.history
R/GenerateXlsxFiles.R
R/Graph.R
R/PermutationFunction.R
R/Test/RunitTest.R
R/Test/runitc2f.R
R/Untitled.R
R/barplotFunction.R
R/compoundListFunctions.R
R/dataFrameFunctions.R
R/dataVsKeggInfoFunctions.R
R/edgeListFunctions.R
R/extractingKGMLfromKEGG.R
R/graphFunctions.R
R/heatmapFunction.R
R/parseXML.R
README.md
TYMP.png
assoDistance.xlsx
heatmapAsso1.png
man/Graph-class.Rd
man/allShortestPaths-Graph-method.Rd
man/associatedShortestPaths-Graph-method.Rd
man/barplot_adjustMaximalDistance.Rd
man/createGraphFromPathway.Rd
man/createIGraph-GraphElements-method.Rd
man/distanceGeneToAllMetabolite.Rd
man/finalReactionEdgeDF.Rd
man/fromAssosDFEntryToIGraphIdDF-Graph-method.Rd
man/getCompoundNodeKgmlId.Rd
man/getDataFrameOfDuplicateCompounds.Rd
man/getDistanceAll.Rd
man/getDistanceAsso.Rd
man/getFinalAssoDfSd-Graph-method.Rd
man/getFinalDFSHortestDistance-Graph-method.Rd
man/getHeadTailKgmlIdOfEdge.Rd
man/getIdGeneInGraph-Graph-method.Rd
man/getIdMetabolitesInGraph-Graph-method.Rd
man/getListEdgeFromGeneKGML.Rd
man/getListNodeFromKGML.Rd
man/getListReactionFromKGML.Rd
man/getPathwayKGML.Rd
man/heatmapFunction.Rd
man/hello.Rd
man/igraph-class.Rd
man/mergeRowsWithSmallestValueByKEGGId.Rd
man/mergeVectorsLowerValues.Rd
man/permutationFunction.Rd
man/removeRowsDistanceAll.Rd
man/unlistEdgeReactionCol.Rd
permutations.png
shinAndal.xlsx
tests/testthat/test-getDistanceAsso.R
