getIdGeneInGraph-Graph-method: A igraph function
In sandraTL/PADIGM: Pathway Analysis with distance between genes and metablites
Description
Usage
Arguments
Details
Examples
Description
Modification of dataframe giving in entry by user, from
c("gene", "metabolite") to a dataFrame contaning one metabolite associated
with the gene edge in the Graph by adding igraph id from Graph object
Modification of dataframe giving in entry by user, from
c("gene", "metabolite") to a dataFrame contaning one metabolite associated
with the gene edge in the Graph by adding igraph id from Graph object
Usage
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## S4 method for signature 'Graph'
getIdGeneInGraph(object, associatedGeneMetaDF,
indexMetabolite)
## S4 method for signature 'Graph'
getIdGeneInGraph(object, associatedGeneMetaDF,
indexMetabolite)
Arguments
Graph,
data, indexMetabolites
Graph,
data, indexMetabolites
Details
indcieMetabolite selects either the first or second metabolite related to
that gene
if indexMetabolite = 1
d1 = c("metabolite1giIdIniGraph", "metabolitesIdIniGraph")
if indexMetabolite = 2
d2 = c("metabolite2giIdIniGraph", "metabolitesIdIniGraph")
where Graph param is the Graph object
where data is (gene, metabolite)
where indice metabolites is only 1 or 2
indcieMetabolite selects either the first or second metabolite related to
that gene
if indexMetabolite = 1
d1 = c("metabolite1giIdIniGraph", "metabolitesIdIniGraph")
if indexMetabolite = 2
d2 = c("metabolite2giIdIniGraph", "metabolitesIdIniGraph")
where Graph param is the Graph object
where data is (gene, metabolite)
where indice metabolites is only 1 or 2
Examples
1
2
sandraTL/PADIGM documentation built on May 29, 2019, 1:45 p.m.
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Description Usage Arguments Details Examples
Description
Modification of dataframe giving in entry by user, from c("gene", "metabolite") to a dataFrame contaning one metabolite associated with the gene edge in the Graph by adding igraph id from Graph object
Modification of dataframe giving in entry by user, from c("gene", "metabolite") to a dataFrame contaning one metabolite associated with the gene edge in the Graph by adding igraph id from Graph object
Usage
1 2 3 4 5 6 7 | ## S4 method for signature 'Graph'
getIdGeneInGraph(object, associatedGeneMetaDF,
indexMetabolite)
## S4 method for signature 'Graph'
getIdGeneInGraph(object, associatedGeneMetaDF,
indexMetabolite)
|
Arguments
Graph, |
data, indexMetabolites |
Graph, |
data, indexMetabolites |
Details
indcieMetabolite selects either the first or second metabolite related to that gene
if indexMetabolite = 1 d1 = c("metabolite1giIdIniGraph", "metabolitesIdIniGraph") if indexMetabolite = 2 d2 = c("metabolite2giIdIniGraph", "metabolitesIdIniGraph")
where Graph param is the Graph object where data is (gene, metabolite) where indice metabolites is only 1 or 2
indcieMetabolite selects either the first or second metabolite related to that gene
if indexMetabolite = 1 d1 = c("metabolite1giIdIniGraph", "metabolitesIdIniGraph") if indexMetabolite = 2 d2 = c("metabolite2giIdIniGraph", "metabolitesIdIniGraph")
where Graph param is the Graph object where data is (gene, metabolite) where indice metabolites is only 1 or 2
Examples
1 2 |
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