API for sandraTL/PADIGM
Pathway Analysis with distance between genes and metablites

Global functions
Graph-class Man page
RUnitTest Source code
allShortestPaths,Graph-method Man page
assoDataXlsx Source code
associatedShortestPaths,Graph-method Man page
barplotFunctionGeneToAllMetabo Source code
barplot_adjustMaximalDistance Man page Source code
c2f Source code
changeDFassoToRigthDistances Source code
correctKeggIdString Source code
correctReactionString Source code
createGraphFromPathway Man page Source code
createIGraph,GraphElements-method Man page
distanceGeneToAllMetabolite Man page Source code
finalReactionEdgeDF Man page Source code
fromAssosDFEntryToIGraphIdDF,Graph-method Man page
genesInKEGGandInMap Source code
getAllGeneInMap Source code
getAllHumanGeneInKEGG Source code
getAllMetaboliteInKEGG Source code
getAllMetaboliteInMap Source code
getAssociatedMetaboByGene Source code
getAssociationForHeatmap Source code
getCellsToHighligh Source code
getCommonNames Source code
getCompoundNodeKgmlId Man page Source code
getDataFrameOfDuplicateCompounds Man page Source code
getDistanceAll Man page Source code
getDistanceAsso Man page Source code
getFinalAssoDfSd,Graph-method Man page
getFinalDFSHortestDistance,Graph-method Man page
getHeadTailKgmlIdOfEdge Man page Source code
getIdGeneInGraph,Graph-method Man page
getIdMetabolitesInGraph,Graph-method Man page
getKGMLRootNode Source code
getListEdgeFromGeneKGML Man page Source code
getListNodeFromKGML Man page Source code
getListReactionFromKGML Man page Source code
getPathwayKGML Man page Source code
heatmapFunction Man page Source code
hello Man page
histogramFunction Source code
igraph-class Man page
isFileInDirectory Source code
merge2DFWithSmallestValue Source code
mergeRowsWithSmallestValueByKEGGId Man page Source code
mergeVectorsLowerValues Man page Source code
metabolitesInKEGGandInMap Source code
multiplot Source code
numberOfMetabolites Source code
numberOfReactions Source code
permutationFunction Man page Source code
removeDuplicatedColumnDF Source code
removeNotInGraph Source code
removeRowsDistanceAll Man page Source code
removeRowsDistanceAsso Source code
test.c2f Source code
toCompoundAdressfile Source code
toStringAdressfile Source code
toStringDestfile Source code
toStringPathFile Source code
unlistEdgeReactionCol Man page Source code
sandraTL/PADIGM documentation built on May 26, 2017, 12:27 a.m.