FilterBarcodes: Filter barcodes

Description Usage Arguments Value

Description

Filter barcodes

Usage

1
FilterBarcodes(E, min_genes_before = 0, min_umi_before = 0, keep = T)

Arguments

E

Expression matrix or a list of expression matrices

min_genes_before

All barcodes with less than min_genes_before detected will be removed prior to background correction.

min_umi_before

All barcodes with less than min_umi_before will be removed prior to background correction.

keep

If TRUE, all genes are kept for total counts and genes detected calculation. If FALSE, total counts and genes detected are caculated after discarding mitochondrial and ribosomal genes.

Value

Filtered expression matrices and barcodes


sanofi-pi/prifti documentation built on Oct. 12, 2020, 8:06 p.m.