MitoBoxPlot: Plot a boxplot for the fraction of mitochondrial rna
In sanofi-pi/prifti: Generates QC plots, performs ambient RNA removal, and enhanced differential from single cell RNA sequencing data
Description
Usage
Arguments
Value
See Also
Description
Plot a boxplot for the fraction of mitochondrial rna
Usage
1
2
3
4
5
MitoBoxPlot(
E,
order.by = c("average depth", "mito percentage")[1],
choose = "all"
)
Arguments
E
Count matrix (see ?Read_h5)
order.by
Order by a quantity associated with each sample. Options are "AvgDepth" or "Mito", default is AvgDepth.
choose
See ?GetMito or ?FilterMito
Value
ggplot objects of genes detected ordered by average depth
See Also
GeneBoxPlot; CoverageBoxPlot
sanofi-pi/prifti documentation built on Oct. 12, 2020, 8:06 p.m.
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Description Usage Arguments Value See Also
Description
Plot a boxplot for the fraction of mitochondrial rna
Usage
1 2 3 4 5 | MitoBoxPlot(
E,
order.by = c("average depth", "mito percentage")[1],
choose = "all"
)
|
Arguments
E |
Count matrix (see ?Read_h5) |
order.by |
Order by a quantity associated with each sample. Options are "AvgDepth" or "Mito", default is AvgDepth. |
choose |
See ?GetMito or ?FilterMito |
Value
ggplot objects of genes detected ordered by average depth
See Also
GeneBoxPlot; CoverageBoxPlot
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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