impSummary: Create counts of imputation basis and target variants

In sarahcn/impplotr: Summarize Metrics from University of Michigan Imputation Server

Description

Create counts of imputation basis and target variants

Usage

impSummary(start_chr, end_chr, parX = FALSE, out_dir, mets_all,
  keep_list = NA)

Arguments

start_chr	Start chromosome (1:23)
end_chr	End chromosome (1:23)
parX	logical whether to include PAR (not implemented)
out_dir	Output directory
mets_all	Dataframe of imputation metrics created by readMetrics
keep_list	File path of an initial variant keep list, with columns variant name and chromosome (integer)

Value

Writes a csv file of variant counts

sarahcn/impplotr documentation built on May 3, 2019, 9 p.m.