maskedPlots: Graph masked variant metrics
In sarahcn/impplotr: Summarize Metrics from University of Michigan Imputation Server
Description
Usage
Arguments
Value
View source: R/plotting_functions.R
Description
Graph masked variant metrics
Usage
1
maskedPlots(out_dir, start_chr, end_chr, parX = FALSE, rsq_filt, mets_all)
Arguments
out_dir
Output directory
start_chr
Start chromosome (1:23)
end_chr
End chromosome (1:23)
parX
logical whether to include PAR (not implemented)
rsq_filt
Rsq threshold for binning masked variants
mets_all
Dataframe of imputation metrics created by readMetrics
Value
4x4 plot of masked variant metrics
sarahcn/impplotr documentation built on May 3, 2019, 9 p.m.
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Description Usage Arguments Value
View source: R/plotting_functions.R
Description
Graph masked variant metrics
Usage
1 | maskedPlots(out_dir, start_chr, end_chr, parX = FALSE, rsq_filt, mets_all)
|
Arguments
out_dir |
Output directory |
start_chr |
Start chromosome (1:23) |
end_chr |
End chromosome (1:23) |
parX |
logical whether to include PAR (not implemented) |
rsq_filt |
Rsq threshold for binning masked variants |
mets_all |
Dataframe of imputation metrics created by |
Value
4x4 plot of masked variant metrics
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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