readMetrics: Read in imputation metrics files

In sarahcn/impplotr: Summarize Metrics from University of Michigan Imputation Server

Description

Reads in metrics files generated by University of Michigan Imputation Server. Note: optimized for use with reference HRC 1.1 (SNP only)

Usage

readMetrics(imp_dir, start_chr, end_chr, parX = FALSE)

Arguments

imp_dir	Imputation directory containing metrics files
start_chr	Start chromosome (1:23)
end_chr	End chromosome (1:23)
parX	logical whether to include PAR (not implemented)

Value

Dataframe of imputation metrics, from start_chr to end_chr

Examples

## Not run: 
mets <- readMetrics("mymetsdir", "proj", start_chr=1, end_chr=23)

## End(Not run)

sarahcn/impplotr documentation built on May 3, 2019, 9 p.m.