readMetrics: Read in imputation metrics files

Description Usage Arguments Value Examples

View source: R/utility_functions.R

Description

Reads in metrics files generated by University of Michigan Imputation Server. Note: optimized for use with reference HRC 1.1 (SNP only)

Usage

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readMetrics(imp_dir, start_chr, end_chr, parX = FALSE)

Arguments

imp_dir

Imputation directory containing metrics files

start_chr

Start chromosome (1:23)

end_chr

End chromosome (1:23)

parX

logical whether to include PAR (not implemented)

Value

Dataframe of imputation metrics, from start_chr to end_chr

Examples

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## Not run: 
mets <- readMetrics("mymetsdir", "proj", start_chr=1, end_chr=23)

## End(Not run)

sarahcn/impplotr documentation built on May 3, 2019, 9 p.m.