Description Usage Arguments Value
View source: R/plotting_functions.R
Plot masked variant strand check
1 | maskedStrandCheck(out_dir, start_chr, end_chr, mets_all)
|
out_dir |
Output directory |
start_chr |
Start chromosome (1:23) |
end_chr |
End chromosome (1:23) |
mets_all |
Dataframe of imputation metrics created by |
Scatterplot of masked variant metrics that can help identify systematic strand alignment issues Caveat the resulting plot can be messy. Read the log file to understand the count of variants in the problematic quadrant: those imputed with high confidence but low concordance.
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