maskedSummary: Summarize masked variant metrics

Description Usage Arguments Value

View source: R/summary_functions.R

Description

Summarize masked variant metrics

Usage

1
maskedSummary(maf_thresh = 0.05, mets_all, out_dir, start_chr, end_chr)

Arguments

maf_thresh

Minor allele frequency threshold for grouping masked variants

mets_all

Dataframe of imputation metrics created by readMetrics

out_dir

Output directory

start_chr

Start chromosome (1:23)

end_chr

End chromosome (1:23)

Value

Writes a csv file of masked metric summaries


sarahcn/impplotr documentation built on May 3, 2019, 9 p.m.