data-raw/setup_combine.R

In sartorlab/chipenrich.data: Companion package to chipenrich

source('data-raw/setup_combine_functions.R')
devtools::load_all()

build_combine(type = c('BioCarta'), org_code = c('Hs'), min_geneset_size = 10)
build_combine(type = c('CTD'), org_code = c('Hs'), min_geneset_size = 10)
build_combine(type = c('CTD'), org_code = c('Mm'), min_geneset_size = 10)
build_combine(type = c('DrugBank'), org_code = c('Hs'), min_geneset_size = 10)
build_combine(type = c('Hallmark'), org_code = c('Hs'), min_geneset_size = 10)
build_combine(type = c('Immunologic'), org_code = c('Hs'), min_geneset_size = 10)
build_combine(type = c('KEGG'), org_code = c('Hs'), min_geneset_size = 10)
build_combine(type = c('MicroRNA'), org_code = c('Hs'), min_geneset_size = 10)
build_combine(type = c('Oncogenic'), org_code = c('Hs'), min_geneset_size = 10)
build_combine(type = c('pfam'), org_code = c('Hs'), min_geneset_size = 10)
build_combine(type = c('TF'), org_code = c('Hs'), min_geneset_size = 10)
build_combine(type = c('BioGrid'), org_code = c('Hs'), min_geneset_size = 10)