Man pages for satijalab/seurat-wrappers
Community-Provided Methods and Extensions for the Seurat Object
| ALRAChooseKPlot | ALRA Approximate Rank Selection Plot |
| as.cell_data_set | Convert objects to Monocle3 'cell_data_set' objects |
| as.Seurat.extras | Extra conversions to Seurat objects |
| CellBrowser | Export 'Seurat' objects for UCSC cell browser and stop open... |
| FastMNNIntegration | Run fastMNN in Seurat 5 |
| findMatrix | used by ExportToCellbrowser: Return a matrix object from a... |
| LearnGraph | Run 'link[monocle3]{learn_graph}' on a 'Seurat' object |
| PlotMiQC | Run miQC on a Seurat object |
| ReadAlevin | Load alevin quantification data |
| ReadVelocity | Load RNA Velocity data from a loom file |
| RunALRA | Run Adaptively-thresholded Low Rank Approximation (ALRA) |
| RunBanksy | Run Banksy on a Seurat Object |
| RunCoGAPS | Run CoGAPs on a Seurat object |
| RunFastMNN | Run fastMNN |
| RunGLMPCA | Run GLMPCA |
| RunMiQC | Run miQC on a Seurat object |
| RunOptimizeALS | Run optimizeALS on a Seurat object |
| RunPaCMAP | Run PaCMAP (Pairwise Controlled Manifold Approximation) |
| RunPresto | A Presto-based implementation of FindMarkers that runs... |
| RunPrestoAll | A Presto-based implementation of FindAllMarkers that runs... |
| RunQuantileAlignSNF | Run quantileAlignSNF on a Seurat object |
| RunQuantileNorm | Run quantile_norm on a Seurat object |
| RunSNF | Generate shared factor neighborhood graph |
| Runtricycle | Run estimate_cycle_position on a Seurat object |
| RunVelocity | Run RNA Velocty |
| scVIIntegration | scVI Integration |
| SeuratWrappers-package | SeuratWrappers: Community-Provided Methods and Extensions for... |
| StopCellbrowser | Stop Cellbrowser web server |
| VeloPlot | RNA Velocity Plot |
| writeSparseTsvChunks | Used by 'ExportToCellbrowser': Write a big sparse matrix to a... |
