ALRAChooseKPlot: ALRA Approximate Rank Selection Plot
In satijalab/seurat-wrappers: Community-Provided Methods and Extensions for the Seurat Object
ALRAChooseKPlot R Documentation
ALRA Approximate Rank Selection Plot
Description
Plots the results of the approximate rank selection process for ALRA.
Usage
ALRAChooseKPlot(object, start = 0, combine = TRUE)
Arguments
object
Seurat object
start
Index to start plotting singular value spacings from.
The transition from "signal" to "noise" in the is hard to see because the
first singular value spacings are so large. Nicer visualizations result from
skipping the first few. If set to 0 (default) starts from k/2.
combine
Combine plots into a single gg object; note that if TRUE,
themeing will not work when plotting multiple features
Value
A list of 3 ggplot objects splotting the singular values, the
spacings of the singular values, and the p-values of the singular values.
Author(s)
Jun Zhao, George Linderman
See Also
RunALRA
satijalab/seurat-wrappers documentation built on April 10, 2024, 3:25 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| ALRAChooseKPlot | R Documentation |
ALRA Approximate Rank Selection Plot
Description
Plots the results of the approximate rank selection process for ALRA.
Usage
ALRAChooseKPlot(object, start = 0, combine = TRUE)
Arguments
object |
Seurat object |
start |
Index to start plotting singular value spacings from. The transition from "signal" to "noise" in the is hard to see because the first singular value spacings are so large. Nicer visualizations result from skipping the first few. If set to 0 (default) starts from k/2. |
combine |
Combine plots into a single gg object; note that if TRUE, themeing will not work when plotting multiple features |
Value
A list of 3 ggplot objects splotting the singular values, the spacings of the singular values, and the p-values of the singular values.
Author(s)
Jun Zhao, George Linderman
See Also
RunALRA
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.