PlotMiQC: Run miQC on a Seurat object
In satijalab/seurat-wrappers: Community-Provided Methods and Extensions for the Seurat Object
PlotMiQC R Documentation
Run miQC on a Seurat object
Description
Run miQC on a Seurat object
Usage
PlotMiQC(
seurat_object,
percent.mt = "percent.mt",
nFeature_RNA = "nFeature_RNA",
model.slot = "flexmix_model",
color.by = "miQC.probability"
)
Arguments
object
Seurat object
Details
_Function to plot the miQC mixture model stored in a Seurat object. 'RunMiQC' must be run prior to plotting._
References
Hippen et al. (2021) miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing data. bioRxiv doi: 10.1101/2021.03.03.433798
satijalab/seurat-wrappers documentation built on April 10, 2024, 3:25 p.m.
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| PlotMiQC | R Documentation |
Run miQC on a Seurat object
Description
Run miQC on a Seurat object
Usage
PlotMiQC(
seurat_object,
percent.mt = "percent.mt",
nFeature_RNA = "nFeature_RNA",
model.slot = "flexmix_model",
color.by = "miQC.probability"
)
Arguments
object |
Seurat object |
Details
_Function to plot the miQC mixture model stored in a Seurat object. 'RunMiQC' must be run prior to plotting._
References
Hippen et al. (2021) miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing data. bioRxiv doi: 10.1101/2021.03.03.433798
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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