RunVelocity: Run RNA Velocty

In satijalab/seurat-wrappers: Community-Provided Methods and Extensions for the Seurat Object

Run RNA Velocty

Description

Run RNA Velocty

Usage

RunVelocity(
  object,
  spliced = "spliced",
  unspliced = "unspliced",
  ambiguous = NULL,
  spliced.average = 0.2,
  unspliced.average = 0.05,
  reduction = "pca",
  group.by = "ident",
  cells = NULL,
  graph = NULL,
  ncores = 1,
  verbose = TRUE,
  ...
)

Arguments

object	A Seurat object
spliced	Name of spliced assay
unspliced	Name of unspliced assay
ambiguous	Optional name of ambiguous assay
spliced.average, unspliced.average	Required minimum average expression count for the spliced and unspliced expression matrices
reduction	Name of reduction to use
group.by	Factor to group cells by
cells	Vector of cells to use; defaults to all cells (see gene.relative.velocity.estimates:steady.state.cells)
graph	Optional name of nearest neighbor graph to use
ncores	Number of cores to use
verbose	Display progress updates
...	Extra parameters passed to gene.relative.velocity.estimates

Value

...

See Also

gene.relative.velocity.estimates Tool

satijalab/seurat-wrappers documentation built on April 10, 2024, 3:25 p.m.