TransferSketchLabels | R Documentation |
This function transfers cell type labels from a sketched dataset to a full dataset based on the similarities in the lower dimensional space.
TransferSketchLabels(
object,
sketched.assay = "sketch",
reduction,
dims,
refdata = NULL,
k = 50,
reduction.model = NULL,
neighbors = NULL,
recompute.neighbors = FALSE,
recompute.weights = FALSE,
verbose = TRUE
)
object |
A Seurat object. |
sketched.assay |
Sketched assay name. Default is 'sketch'. |
reduction |
Dimensional reduction name to use for label transfer. |
dims |
An integer vector indicating which dimensions to use for label transfer. |
refdata |
A list of character strings indicating the metadata columns containing labels to transfer. Default is NULL. Similar to refdata in 'MapQuery' |
k |
Number of neighbors to use for label transfer. Default is 50. |
reduction.model |
Dimensional reduction model to use for label transfer. Default is NULL. |
neighbors |
An object storing the neighbors found during the sketching process. Default is NULL. |
recompute.neighbors |
Whether to recompute the neighbors for label transfer. Default is FALSE. |
recompute.weights |
Whether to recompute the weights for label transfer. Default is FALSE. |
verbose |
Print progress and diagnostic messages |
A Seurat object with transferred labels stored in the metadata. If a UMAP model is provided, the full data are also projected onto the UMAP space, with the results stored in a new reduction, full.'reduction.model'
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.