UpdateSymbolList | R Documentation |
Find current gene symbols based on old or alias symbols using the gene names database from the HUGO Gene Nomenclature Committee (HGNC)
GeneSymbolThesarus(
symbols,
timeout = 10,
several.ok = FALSE,
search.types = c("alias_symbol", "prev_symbol"),
verbose = TRUE,
...
)
UpdateSymbolList(
symbols,
timeout = 10,
several.ok = FALSE,
verbose = TRUE,
...
)
symbols |
A vector of gene symbols |
timeout |
Time to wait before canceling query in seconds |
several.ok |
Allow several current gene symbols for each provided symbol |
search.types |
Type of query to perform:
This parameter accepts multiple options and short-hand options
(eg. “ |
verbose |
Show a progress bar depicting search progress |
... |
Extra parameters passed to |
For each symbol passed, we query the HGNC gene names database for
current symbols that have the provided symbol as either an alias
(alias_symbol
) or old (prev_symbol
) symbol. All other queries
are not supported.
GeneSymbolThesarus
:, if several.ok
, a named list
where each entry is the current symbol found for each symbol provided and
the names are the provided symbols. Otherwise, a named vector with the
same information.
UpdateSymbolList
: symbols
with updated symbols from
HGNC's gene names database
This function requires internet access
https://www.genenames.org/ https://www.genenames.org/help/rest/
GET
## Not run:
GeneSybmolThesarus(symbols = c("FAM64A"))
## End(Not run)
## Not run:
UpdateSymbolList(symbols = cc.genes$s.genes)
## End(Not run)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.