subset.AnchorSet | R Documentation |
Subset an AnchorSet object
## S3 method for class 'AnchorSet'
subset(
x,
score.threshold = NULL,
disallowed.dataset.pairs = NULL,
dataset.matrix = NULL,
group.by = NULL,
disallowed.ident.pairs = NULL,
ident.matrix = NULL,
...
)
x |
object to be subsetted. |
score.threshold |
Only anchor pairs with scores greater than this value are retained. |
disallowed.dataset.pairs |
Remove any anchors formed between the
provided pairs. E.g. |
dataset.matrix |
Provide a binary matrix specifying whether a dataset pair is allowable (1) or not (0). Should be a dataset x dataset matrix. |
group.by |
Grouping variable to determine allowable ident pairs |
disallowed.ident.pairs |
Remove any anchors formed between provided
ident pairs. E.g. |
ident.matrix |
Provide a binary matrix specifying whether an ident pair is allowable (1) or not (0). Should be an ident x ident symmetric matrix |
... |
further arguments to be passed to or from other methods. |
Returns an AnchorSet
object with specified anchors
filtered out
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