Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool, identifies targets combining expression and biophysical interactions of a given microRNA (miR). Using the tool, we have identified targets for 92 intragenic miRs in D. melanogaster, using available microarray expression data, from Affymetrix 1 and Affymetrix2 microarray array platforms, providing a global perspective of intragenic miR targets in Drosophila. Predicted targets are grouped according to biological functions using the DAVID Gene Ontology tool and are ranked based on a biologically relevant scoring system, enabling the user to identify functionally relevant targets for a given miR.
Package details |
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Author | Surajit Bhattacharya and Daniel Cox |
Bioconductor views | GeneExpression GenePrediction GeneTarget Microarray Software StatisticalMethod |
Maintainer | Surajit Bhattacharya <sbhattacharya3@student.gsu.edu> |
License | GPL-2 |
Version | 1.00.0 |
URL | https://github.com/sbhattacharya3/IntramiRExploreR/ |
Package repository | View on GitHub |
Installation |
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