sbhattacharya3/IntramiRExploreR: Predicting Targets for Drosophila Intragenic miRNAs

Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool, identifies targets combining expression and biophysical interactions of a given microRNA (miR). Using the tool, we have identified targets for 92 intragenic miRs in D. melanogaster, using available microarray expression data, from Affymetrix 1 and Affymetrix2 microarray array platforms, providing a global perspective of intragenic miR targets in Drosophila. Predicted targets are grouped according to biological functions using the DAVID Gene Ontology tool and are ranked based on a biologically relevant scoring system, enabling the user to identify functionally relevant targets for a given miR.

Getting started

Package details

AuthorSurajit Bhattacharya and Daniel Cox
Bioconductor views GeneExpression GenePrediction GeneTarget Microarray Software StatisticalMethod
MaintainerSurajit Bhattacharya <sbhattacharya3@student.gsu.edu>
LicenseGPL-2
Version1.00.0
URL https://github.com/sbhattacharya3/IntramiRExploreR/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("sbhattacharya3/IntramiRExploreR")
sbhattacharya3/IntramiRExploreR documentation built on May 29, 2019, 3:23 p.m.