GetGOS_ALL: Gene ontology for Target Genes.

In sbhattacharya3/IntramiRExploreR: Predicting Targets for Drosophila Intragenic miRNAs

Description

Gene ontology for Target Genes.

Usage

GetGOS_ALL(gene, GO = c("DAVID", "topGO"), term = c("GOTERM_BP_ALL",
  "GOTERM_MF_ALL", "GOTERM_CC_ALL"), geneIdType = "ALIAS", email,
  path = tempdir(), ontology = c("GO_BP", "GO_MF", "GO_CC"), filename)

Arguments

gene	List A String or vector containing the Gene names.
GO	A String depicting the chosen GO tool. Choices are "David" and "topGO"
term	A String depicting the chosen term. Choices are "GOTERM_BP_ALL","GOTERM_MF_ALL", "GOTERM_CC_ALL".
geneIdType	Type of gene Id given as input. Default "ALIAS"
email	Email Id to connect to David.
path	String. The path where the data is stored if TEXT=TRUE.
ontology	Ontology selection for topGO. Choices are "GO_BP","GO_MF","GO_CC".
filename	Name of the file to store Gene Ontology.

Value

Depending upon the ouput choice data is stored in the path specified. Default option prints output to the console.

Examples

## Not run: 
miR="dme-miR-12"
a<-Visualisation(miR,mRNA_type=c("GeneSymbol"),method=c("Both"),
   platform=c("Affy1"),thresh=100)
genes<-a$Target_GeneSymbol
GetGOS_ALL(genes,GO=c("topGO"),term=c("GO_BP"),path=tempdir(),
     filename="test")
 
## End(Not run)

sbhattacharya3/IntramiRExploreR documentation built on May 29, 2019, 3:23 p.m.