genes_Stat: Extracting miRNAs that target a query gene.

In sbhattacharya3/IntramiRExploreR: Predicting Targets for Drosophila Intragenic miRNAs

Description

Extracting miRNAs that target a query gene.

Usage

genes_Stat(gene, geneIDType = c("GeneSymbol", "FBGN", "CGID"),
  method = c("Pearson", "Distance", "Both", "BothIntersect"),
  Platform = c("Affy1", "Affy2"), Text = FALSE, outpath = tempdir())

Arguments

gene	character. gene Identifier.
geneIDType	character. GeneIDtype choices are 'GeneSymbol', 'FBGN', 'CGID'
method	character. Choices are 'Pearson','Distance','Both' and 'BothIntersected'
Platform	character. Choices are 'Affy1','Affy2'.
Text	logical . To choose between storing the data as text file. Default is FALSE.
outpath	character. The path where the data is stored if TEXT=TRUE. Default is

Value

Outputs the miRNA information, Target Prediction Score, miRNA miRNA function and Target Database that predicts the interaction in a dataframe. Depending upon the ouput choice data is stored in the path specified. Default option prints output to the console.

Examples

gene="Syb"
genes_Stat(gene,geneIDType="GeneSymbol",method=c("Pearson"),
           Platform=c("Affy1"),Text=FALSE)

sbhattacharya3/IntramiRExploreR documentation built on May 29, 2019, 3:23 p.m.