miRTargets_Stat: Extracting miRNAs that target a query gene.

In sbhattacharya3/IntramiRExploreR: Predicting Targets for Drosophila Intragenic miRNAs

Description

Extracting miRNAs that target a query gene.

Usage

miRTargets_Stat(miR, method = c("Pearson", "Distance", "Both",
  "BothIntersect"), Platform = c("Affy1", "Affy2"), outpath = tempdir(),
  Text = FALSE)

Arguments

miR	character. miRNA symbol.
method	character. Choices are "Pearson", "Distance","Both" and "BothIntersected"
Platform	character. Choices are "Affy1","Affy2".
outpath	character. The path where the data is stored if TEXT=TRUE. Default is tempdir().
Text	logical . To choose between storing the data as text file. Default is FALSE.

Value

Outputs the target information, Target Prediction Score, miRNA target function and Target Database that predicts the interaction in a dataframe. Depending upon the ouput choice data is stored in the path specified. Default option prints output to the console.

Examples

miRNA="dme-miR-12"
miRTargets_Stat (miRNA,method=c ("Pearson"),Platform=c ("Affy1"),Text=FALSE)

sbhattacharya3/IntramiRExploreR documentation built on May 29, 2019, 3:23 p.m.