miRTargets_Stat: Extracting miRNAs that target a query gene.

Description Usage Arguments Value Examples

Description

Extracting miRNAs that target a query gene.

Usage

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miRTargets_Stat(miR, method = c("Pearson", "Distance", "Both",
  "BothIntersect"), Platform = c("Affy1", "Affy2"), outpath = tempdir(),
  Text = FALSE)

Arguments

miR

character. miRNA symbol.

method

character. Choices are "Pearson", "Distance","Both" and "BothIntersected"

Platform

character. Choices are "Affy1","Affy2".

outpath

character. The path where the data is stored if TEXT=TRUE. Default is tempdir().

Text

logical . To choose between storing the data as text file. Default is FALSE.

Value

Outputs the target information, Target Prediction Score, miRNA target function and Target Database that predicts the interaction in a dataframe. Depending upon the ouput choice data is stored in the path specified. Default option prints output to the console.

Examples

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miRNA="dme-miR-12"
miRTargets_Stat (miRNA,method=c ("Pearson"),Platform=c ("Affy1"),Text=FALSE)

sbhattacharya3/IntramiRExploreR documentation built on May 29, 2019, 3:23 p.m.