API for schuyler-smith/phyloschuyler
Functions to help analyze data as phyloseq objects

Global functions
ADDNA Source code
CI_ellipse Man page Source code
CUT Source code
Correlation Man page Source code
abundance_heatmap Man page Source code
abundance_lines Man page Source code
alpha_diversity_graph Man page Source code
arrange_co_occurrence_table Man page Source code
assign_rank Man page Source code
bin Man page Source code
change_labels Man page Source code
check_TaR Man page Source code
check_args Source code
check_boolean Source code
check_boolean_or_frequency Source code
check_classification Source code
check_co_occurrence_table Source code
check_colors Source code
check_cores Source code
check_frequency Source code
check_index_classification Man page Source code
check_index_treatment Man page Source code
check_n Source code
check_options Source code
check_permuted_rhos Source code
check_phyloseq Source code
check_phyloseq_object Source code
check_positive_numeric Source code
check_string Source code
check_strings Source code
check_subset Source code
check_treatment Source code
co_occurrence Man page Source code
co_occurrence_network Man page Source code
common_taxa Man page Source code
conglomerate_samples Man page Source code
conglomerate_taxa Man page Source code
create_palette Man page Source code
curate_co_occurrence Man page Source code
dendrogram_phyloseq Man page Source code
histogram_permuted_rhos Man page Source code
ia_lakes Man page
library_size Man page Source code
melt_phyloseq Man page Source code
merge_treatments Man page Source code
mock_phyloseq Man page
mock_phyloseq_2 Man page
network_layout_ps Man page
network_ps Man page Source code
nmds_phyloseq Man page Source code
pcoa_phyloseq Man page Source code
permute_rho Man page Source code
permute_rho_Rcpp Man page Source code
phylogeny_profile Man page Source code
phyloparts Source code
phylosmith Man page
quantile_permuted_rhos Man page Source code
relative_abundance Man page Source code
return_parts Source code
set_sample_order Man page Source code
set_treatment_levels Man page Source code
soil_column Man page
taxa_abundance_bars Man page Source code
taxa_core Man page Source code
taxa_core_graph Man page Source code
taxa_extract Man page Source code
taxa_filter Man page Source code
taxa_proportions Man page Source code
taxa_prune Man page Source code
theme_schuy Source code
tsne_phyloseq Man page
unique_taxa Man page Source code
variable_correlation Man page Source code
variable_correlation_heatmap Man page Source code
variable_correlation_network Man page Source code
schuyler-smith/phyloschuyler documentation built on Aug. 16, 2024, 5:36 a.m.