library_size: Normalizes abundance data in an 'otu_table' using library...
In schuyler-smith/phyloschuyler: Functions to help analyze data as phyloseq objects
library_size R Documentation
Normalizes abundance data in an otu_table using library size.
Function from the phylosmith-package.
Description
Transform abundance data to equal counts using library size and the geometric mean,
i.e. proportional data.
Usage
library_size(phyloseq_obj)
Arguments
phyloseq_obj
A phyloseq-class object. It
must contain sample_data() with
information about each sample, and it must contain
tax_table()) with information about each
taxa/gene.
Value
phyloseq-object
Examples
library_size(soil_column)
schuyler-smith/phyloschuyler documentation built on Aug. 16, 2024, 5:36 a.m.
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| library_size | R Documentation |
Normalizes abundance data in an otu_table using library size.
Function from the phylosmith-package.
Description
Transform abundance data to equal counts using library size and the geometric mean, i.e. proportional data.
Usage
library_size(phyloseq_obj)
Arguments
phyloseq_obj |
A |
Value
phyloseq-object
Examples
library_size(soil_column)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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