network_ps | R Documentation |
Create an igraph network object of the co-occurrence from a phyloseq object. This can be input into the co_occurrence_network function, or used for other network creating scripts. The purpose is to be able to create reproducible and comparable graphics.
network_ps(phyloseq_obj,
treatment = NULL, subset = NULL, co_occurrence_table = NULL, rho = 0.6)
phyloseq_obj |
A |
treatment |
Column name as a string or number in the
|
subset |
A factor within the |
co_occurrence_table |
Table of the co-occurrence of taxa/genes in the
|
rho |
|
igraph network object
network_ps(soil_column, treatment = c('Matrix', 'Treatment'),
subset = 'Soil Amended')
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