View source: R/alpha_diversity_graph.R
alpha_diversity_graph | R Documentation |
Inputs a phyloseq-class
object and
creates boxplot of the alpha diversity as a ggplot object.
alpha_diversity_graph(phyloseq_obj, treatment = NULL, subset = NULL,
index = "shannon", colors = "default")
phyloseq_obj |
A |
treatment |
Column name as a string or number in the
|
subset |
A factor within the |
index |
The diversity index to calculate ("shannon", "simpson", "invsimpson") |
colors |
Name of a color set from the RColorBrewer package or a vector palette of R-accepted colors. |
ggplot-object
alpha_diversity_graph(soil_column, index = "shannon",
treatment = c("Matrix", "Treatment"), subset = NULL, colors = "default")
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