permute_rho_Rcpp: Co-occurrence rho calculations

View source: R/RcppExports.R

permute_rho_RcppR Documentation

Co-occurrence rho calculations

Description

Calculates the pair-wise Spearman rank correlation without testing for significance.

Usage

permute_rho_Rcpp(count_matrix, permuted_matrix, method, ncores)

Arguments

count_matrix

An otu_table in the format from phyloseq

permuted_matrix

An otu_table in the format from phyloseq

method

pearson, spearman

ncores

An int for how many cores to use to multithread the calculations.

Value

A vector with rho values for each pair-wise correlation.

Author(s)

Schuyler D. Smith

See Also

permute_rho


schuyler-smith/phyloschuyler documentation built on Aug. 16, 2024, 5:36 a.m.