getBiocVignette: Download a Bioconductor vignette

In seandavi/BiocPkgTools: Collection of simple tools for learning about Bioconductor Packages

Download a Bioconductor vignette

Description

The actual vignette path is available using biocPkgList.

Usage

getBiocVignette(
  vignettePath,
  destfile = tempfile(),
  version = BiocManager::version()
)

Arguments

vignettePath	character(1) the additional path information to get to the vignette
destfile	character(1) the file location to store the vignette
version	character(1) such as "3.7", defaults to user version

Value

character(1) The filename of the downloaded vignette

Examples

x = biocPkgList()
tmp = getBiocVignette(x$vignettes[[1]][1])
tmp

## Not run: 
library(pdftools)
y = pdf_text(tmp)
y = paste(y,collapse=" ")
library(tm)
v = VCorpus(VectorSource(y))
library(magrittr)

v <- v %>%
    tm_map(stripWhitespace) %>%
    tm_map(content_transformer(tolower)) %>%
    tm_map(removeWords, stopwords("english")) %>%
    tm_map(stemDocument)
dtm = DocumentTermMatrix(v)
inspect(DocumentTermMatrix(v,
    list(dictionary = as.character(x$Package))))

## End(Not run)

seandavi/BiocPkgTools documentation built on Feb. 2, 2024, 12:02 p.m.