pkgCombDependencyGain: Calculate dependency gain achieved by excluding combinations...

In seandavi/BiocPkgTools: Collection of simple tools for learning about Bioconductor Packages

Calculate dependency gain achieved by excluding combinations of packages

Description

Calculate dependency gain achieved by excluding combinations of packages

Usage

pkgCombDependencyGain(pkg, depdf, maxNbr = 3L)

Arguments

pkg	character, the name of the package for which we want to estimate the dependency gain
depdf	a tidy data frame with package dependency information obtained through the function buildPkgDependencyDataFrame
maxNbr	numeric, the maximal number of direct dependencies to leave out simultaneously

Value

A data frame with three columns: ExclPackages (the excluded direct dependencies), NbrExcl (the number of excluded direct dependencies), DepGain (the dependency gain from excluding these direct dependencies)

Author(s)

Charlotte Soneson

Examples

depdf <- buildPkgDependencyDataFrame(
  dependencies=c("Depends", "Imports"), 
  repo=c("BioCsoft", "CRAN")
)
pcd <- pkgCombDependencyGain('GEOquery', depdf, maxNbr = 3L)
head(pcd[order(pcd$DepGain, decreasing = TRUE), ])

seandavi/BiocPkgTools documentation built on Feb. 2, 2024, 12:02 p.m.