Files in serratus-bio/tantalus
R Data Exploration for Serratus
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/Atys.R
R/SeqReference.R
R/Serratus.R
R/SraRunInfo.R
R/Tantalus.R
R/extractNumber.R
R/extractString.R
R/familyPctID.R
R/familyScore.R
R/familyScorePctID.R
R/getBam.R
R/getHeatmap.R
R/getLoadedSummaryFiles.R
R/getReference.R
R/getSraRunInfo.R
R/getSummary.R
R/getSummaryFiles.R
R/parseAtys.R
R/parseFamilies.R
R/parseHits.R
R/parseSummaryFiles.R
R/pctidInScoreIntervals.R
R/readDFs.R
R/readDfSQL.R
R/readHeader.R
R/readHits.R
R/readSerratus.R
R/readSra.R
R/readSraRunInfo.R
R/scoreInPctidIntervals.R
README.md
img/cov.nt.histogram.png
img/cov.nt.scores.png
img/cov.rdrp.histogram.png
img/example_img1.png
img/example_img2.png
img/example_img3.png
img/example_img4.png
img/example_img5.png
img/familyscore_db.png
img/new_img_1.png
img/new_img_2.png
img/pstidscore_db.png
img/score_pctid_db.png
img/scorepctid_db.png
img/tantalus.png
inst/extdata/SRR11822354.summary
inst/extdata/SRR3458562.summary
inst/extdata/SRR5447135.summary
inst/extdata/SRR5447171.summary
inst/extdata/SRR5826722.summary
inst/extdata/SRR6713823.summary
inst/extdata/SRR6846448.summary
inst/extdata/SRR8663628.summary
inst/extdata/SRR8800141.summary
man/Atys.Rd
man/Serratus-class.Rd
man/SraRunInfo.Rd
man/extracSrting.Rd
man/extractNumber.Rd
man/familyPctID.Rd
man/familyScorPctID.Rd
man/familyScore.Rd
man/getBAM.Rd
man/getHeatmap.Rd
man/getLoadedSummaryFiles.Rd
man/getReference.Rd
man/getSraRunInfo.Rd
man/getSummary.Rd
man/getSummaryFiles.Rd
man/parseAtys.Rd
man/parseFamilies.Rd
man/parseHits.Rd
man/parseSummaryFiles.Rd
man/pctidInScoreIntervals.Rd
man/readDFs.Rd
man/readDfSQL.Rd
man/readHeader.Rd
man/readHits.Rd
man/readSerratus.Rd
man/readSra.Rd
man/readSraRunInfo.Rd
man/scoreInPctidIntervals.Rd
man/seqReference.Rd
man/tantalus.Rd
scripts/Gherman_code.Rmd
scripts/NCBI_biosample_filtering.py
scripts/covROC.Rmd
scripts/getBAM.sh
scripts/rna_family_histograms.Rmd
scripts/scratch_analysis.Rmd
scripts/seqReference_igv_template.xml
