getSraRunInfo: Downloads an SRA runInfo file and parses into a RunInfo S4...
In serratus-bio/tantalus: R Data Exploration for Serratus
View source: R/getSraRunInfo.R
getSraRunInfo R Documentation
Downloads an SRA runInfo file and parses
into a RunInfo S4 object
Description
Implicit system dependcies
- aws cli
Usage
getSraRunInfo(runInfo, s3_path = "s3://lovelywater2/sra/", local_path = "sra")
Arguments
runInfo
a string of the name of the sraRunInfo.csv file
s3_path
a string s3 path holding sraRunInfo.csv file
local_path
local path into which to download the data [sra]
Examples
getRunInfo(runInfo = "viro_SraRunInfo.csv",
s3_path = "s3://lovelywater2/sra/",
local_path = "sra")
serratus-bio/tantalus documentation built on March 29, 2023, 9:39 p.m.
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View source: R/getSraRunInfo.R
| getSraRunInfo | R Documentation |
Downloads an SRA runInfo file and parses into a RunInfo S4 object
Description
Implicit system dependcies - aws cli
Usage
getSraRunInfo(runInfo, s3_path = "s3://lovelywater2/sra/", local_path = "sra")
Arguments
runInfo |
a string of the name of the sraRunInfo.csv file |
s3_path |
a string s3 path holding sraRunInfo.csv file |
local_path |
local path into which to download the data [sra] |
Examples
getRunInfo(runInfo = "viro_SraRunInfo.csv",
s3_path = "s3://lovelywater2/sra/",
local_path = "sra")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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