getReference: Downlaods a Serratus Reference Sequence and associated...

In serratus-bio/tantalus: R Data Exploration for Serratus

Downlaods a Serratus Reference Sequence and associated meta-data * Fasta File * Fasta Index * Sumzer Index * Masked regions bed file * taxonomy file (Not Implemented)

Description

Implicit system dependcies - aws cli - gzip

Usage

getReference(
  refName = "cov3ma",
  s3_path = "s3://lovelywater2/seq/",
  local_path = "seq"
)

Arguments

refName	a string of the reference sequence base name
s3_path	a string s3 path to the seq/ folder with references
local_path	local path into which to download the data [seq]

Examples

getReference(refName = "cov3ma",
             s3_path = "s3://serratus-public/seq/",
             local_path = "seq")

serratus-bio/tantalus documentation built on March 29, 2023, 9:39 p.m.