pctidInScoreIntervals: Plot a histogram of pctid for the given family within family...

In serratus-bio/tantalus: R Data Exploration for Serratus

Plot a histogram of pctid for the given family within family score intervals

Description

Plot a histogram of pctid for the given family within family score intervals

Usage

pctidInScoreIntervals(
  family_df,
  family_name = NULL,
  title = "",
  scale_log = F,
  bin_scores = T,
  nucleotide = T,
  keep_levels = F
)

Arguments

family_df	family data frame
family_name	name of the family (single value)
title	title of the plot
scale_log	if plot log scale (not implemented)
bin_scores	if split scores into bins for plotting
nucleotide	TRUE/FALSE if nt or aa plot should be made [TRUE]
keep_levels	TODO TRUE/FALSE should factor level of "family_name" be kept

Value

ggplot

Examples

pctidInScoreIntervals(ZOO, "Coronaviridae", title="Coronaviridae in ZOO")

serratus-bio/tantalus documentation built on March 29, 2023, 9:39 p.m.