getSummaryFiles: getSummaryFiles Downloads a specified list of summary files...

In serratus-bio/tantalus: R Data Exploration for Serratus

getSummaryFiles Downloads a specified list of summary files and parses them into a Serratus S4 object

Description

Implicit system dependcies - aws cli

Usage

getSummaryFiles(
  sras,
  s3_path = "s3://lovelywater2/summary/",
  local_path = "summary_files"
)

Arguments

sras	a string vector of the SRAs to download
s3_path	a string s3 path to summary files
local_path	local path into which to download the data

Value

Serratus S4 class

Examples

sras <- c("SRR9701190", "SRR9705127", "SRR975462", "SRR9843091", "SRR9843092")
serr <- getSummaryFiles(sras, 's3://lovelywater2/summary/', "summary_files")

serratus-bio/tantalus documentation built on March 29, 2023, 9:39 p.m.