topdownr-package: Investigation of Fragmentation Conditions in Top-Down...
In sgibb/topdownr: Investigation of Fragmentation Conditions in Top-Down Proteomics
topdownr-package R Documentation
Investigation of Fragmentation Conditions in Top-Down Proteomics
Description
The topdownr package allows automatic and systemic investigation of
fragment conditions. It creates Thermo Orbitrap Fusion Lumos method files
to test hundreds of fragmentation conditions. Additionally it provides
functions to analyse and process the generated MS data and determine the
best conditions to maximise overall fragment coverage.
Details
The usage of the topdownr package is demonstrated in the following vignettes:
Generate .meth files prior data acquisition for the Thermo Orbitrap Fusion
Lumos MS devise: vignette("data-generation", package="topdownr").
How to analyse top-down fragmenation data:
vignette("analysis", package="topdownr")
Author(s)
Sebastian Gibb mail@sebastiangibb.de,
Pavel Shliaha pavels@bmb.sdu.dk,
Ole Nørregaard Jensen jenseno@bmb.sdu.dk
References
https://github.com/sgibb/topdownr/
See Also
Useful links:
sgibb/topdownr documentation built on Jan. 16, 2024, 12:14 a.m.
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| topdownr-package | R Documentation |
Investigation of Fragmentation Conditions in Top-Down Proteomics
Description
The topdownr package allows automatic and systemic investigation of fragment conditions. It creates Thermo Orbitrap Fusion Lumos method files to test hundreds of fragmentation conditions. Additionally it provides functions to analyse and process the generated MS data and determine the best conditions to maximise overall fragment coverage.
Details
The usage of the topdownr package is demonstrated in the following vignettes:
Generate .meth files prior data acquisition for the Thermo Orbitrap Fusion Lumos MS devise:
vignette("data-generation", package="topdownr").How to analyse top-down fragmenation data:
vignette("analysis", package="topdownr")
Author(s)
Sebastian Gibb mail@sebastiangibb.de, Pavel Shliaha pavels@bmb.sdu.dk, Ole Nørregaard Jensen jenseno@bmb.sdu.dk
References
https://github.com/sgibb/topdownr/
See Also
Useful links:
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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