Files in sgibb/topdownr
Investigation of Fragmentation Conditions in Top-Down Proteomics
.Rbuildignore
.editorconfig
.github/.gitignore
.github/workflows/check-bioc.yml
.gitignore
.lintr
.travis.yml
CONTRIBUTING.md
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/AllClasses.R
R/AllGenerics.R
R/coverage.R
R/experiment-functions.R
R/fragments.R
R/functions-AbstractTopDownSet.R
R/functions-FragmentViews.R
R/functions-Matrix.R
R/functions-NCBSet.R
R/functions-TopDownSet.R
R/functions-data.frame.R
R/import.R
R/method-xml.R
R/methods-AbstractTopDownSet.R
R/methods-FragmentViews.R
R/methods-NCBSet.R
R/methods-TopDownSet.R
R/package-deprecated.R
R/package.R
R/sysdata.rda
R/tds.R
R/utils.R
R/windows.R
R/xml-functions.R
R/zzz.R
README.md
SUPPORT.md
data-raw/createInternalMsSettingData.R
data/tds.RData
inst/CITATION
man/AbstractTopDownSet-class.Rd
man/FragmentViews-class.Rd
man/NCBSet-class.Rd
man/TopDownSet-class.Rd
man/createExperimentsFragmentOptimisation.Rd
man/expandMsConditions.Rd
man/readTopDownFiles.Rd
man/tds.Rd
man/topdownr-deprecated.Rd
man/topdownr-package.Rd
man/validMsSettings.Rd
man/windows-specific-functions.Rd
man/writeMethodXmls.Rd
tests/testthat.R
tests/testthat/test_AbstractTopDownSet.R
tests/testthat/test_FragmentViews.R
tests/testthat/test_Matrix.R
tests/testthat/test_NCBSet.R
tests/testthat/test_TopDownSet.R
tests/testthat/test_coverage.R
tests/testthat/test_data.frame.R
tests/testthat/test_experiment.R
tests/testthat/test_fragments.R
tests/testthat/test_import.R
tests/testthat/test_method-xml.R
tests/testthat/test_utils.R
tests/testthat/test_xml.R
vignettes/analysis.Rmd
vignettes/data-generation.Rmd
vignettes/images/TopDownSet.svg
vignettes/images/methodeditor-exp-tms.png
vignettes/images/ncb.svg
vignettes/images/proteomediscoverer.png
vignettes/images/workflow/Makefile
vignettes/images/workflow/analysis.mmd
vignettes/images/workflow/analysis.mmd.png
vignettes/images/workflow/data-generation.mmd
vignettes/images/workflow/data-generation.mmd.svg
vignettes/images/xtract-myo.png
vignettes/topdownr.bib
