validMsSettings: List valid MS settings.

In sgibb/topdownr: Investigation of Fragmentation Conditions in Top-Down Proteomics

List valid MS settings.

Description

These functions list settings for MS1 or TMS2 that are supported by Thermo's XmlMethodChanger.

Usage

validMs1Settings(family = "Calcium", version = "3.2")

validTms2Settings(
  type = c("All", "TMS2", "ETD", "CID", "HCD", "UVPD"),
  family = "Calcium",
  version = "3.2"
)

Arguments

family	character, currently just Calcium is supported
version	character, currently 3.1, 3.2 (default), 3.3 are supported
type	character, type of activation.

Value

matrix with three columns:

• name: element name

• class: expected R class of the value

• type: MS/ActivationType, e.g. MS1/TMS2/ETD/...

Examples

validMs1Settings()
validTms2Settings()
validTms2Settings("TMS2")
validTms2Settings("ETD")
validTms2Settings(c("TMS2", "ETD"))

sgibb/topdownr documentation built on Jan. 16, 2024, 12:14 a.m.