pipeline: Analyse plot and export dataset

In shaliulab/idocr: Analyze traces created in the Individual Drosophila Optogenetics Conditioner (IDOC)

Analyse plot and export dataset

Description

Take an IDOC dataset

Usage

pipeline(
  experiment_folder,
  dataset,
  min_exits_required,
  mask_duration,
  analysis_mask = NULL,
  ...
)

Arguments

experiment_folder	Path to folder containing IDOC results .csv files
dataset	List of raw data including: roi: every row records the position of one animal at one point in time controller: every row records the status of all IDOC stimulus at one point in time limits border
min_exits_required	Minimal number of exits to be considered for significance
mask_duration	Exits happening this amount of seconds after the last one are ignored
analysis_mask	Numeric vector of length 2 containing start and end timepoint of mask in seconds since the start of the experiment Every behavior outside of the mask is ignored
...	Extra arguments to plot_dataset

Details

A corssing dataset where every record represents a decision zone exit of one animal is required to show the exits in the plot

Value

ggplot2 object

See Also

annotate_cross()

shaliulab/idocr documentation built on June 1, 2025, 4:59 p.m.