preprocess_dataset: Preprocess a RAW idoc dataset

In shaliulab/idocr: Analyze traces created in the Individual Drosophila Optogenetics Conditioner (IDOC)

Preprocess a RAW idoc dataset

Description

1. Preprocess tracker and controller data

2. Features expected by the analysis functions are only available after some minor computations in the raw data

Usage

preprocess_dataset(
  experiment_folder,
  dataset,
  treatments = c("TREATMENT_A", "TREATMENT_B"),
  delay = 0,
  border_mm = 5,
  CSplus_idx = 1
)

Arguments

experiment_folder	Path to folder containing IDOC results .csv files
dataset	List of raw data including: roi: every row records the position of one animal at one point in time controller: every row records the status of all IDOC stimulus at one point in time limits border
treatments	Vector of treatments. If named and names contain the word treatment, it is likely that the user is running old API code
delay	Seconds to shift the representation of the treatments on the plot, to account for a latency or lag between treatment delivery start and arrival to behavioral arena
border_mm	mm from center of chamber to decision zone edge
CSplus_idx	Whether the first treatment (CSplus_idx=1) or the second (CSplus_idx=2) is associated with + exits

Value

tracker_data

shaliulab/idocr documentation built on June 1, 2025, 4:59 p.m.