Files in shambam/cellexalvrR
Provides the backend calculations for CellexalVR
.DS_Store
.Rbuildignore
.gitignore
.settings/.gitignore
.vscode/settings.json
DESCRIPTION
NAMESPACE
R/ClusteringFunctions.R
R/DataPrep.R
R/ExportFunctions.R
R/NetworkFunctions.R
R/Plotting.R
R/addElements.R
R/branchPointAnalysis.R
R/cellexalvrClass.R
R/cellexalvrFunctions.R
R/data.R
R/defineGOIs.R
R/exportUserGroups4vr.R
R/getDifferentials.R
R/groupingInfo.R
R/lockedSave.R
R/logging.R
R/makeCellexalVRObj.R
R/onlyGOIs.R
R/reduceTo.R
R/renew.R
R/reorder.obj.R
R/seuratExtensions.R
R/useInbuiltGOIlists.R
R/userGrouping.R
README.md
cellexalvr.Rproj
data/CellCycle.RData
data/Epigenetic.RData
data/human.CellSurface.RData
data/human.tfs.rda
data/mouse.CellSurface.RData
data/mouse.tfs.rda
install.R
man/Epigenetic.Rd
man/MakeCellexaVRObj.Rd
man/addCellMeta2cellexalvr.Rd
man/addFACS2cellexalvr.Rd
man/addMDS2cellexalvr.Rd
man/branch.point.analysis.Rd
man/cellexalvr-class.Rd
man/changeIdent.Rd
man/checkVRfiles.Rd
man/defineGOIs.Rd
man/export2cellexalvr.Rd
man/exportUserGroups4vr.Rd
man/get.genes.cor.to.Rd
man/getDifferentials.Rd
man/groupingInfo.Rd
man/human.tfs.Rd
man/loadObject.Rd
man/lockedSave.Rd
man/make.cell.meta.from.df.Rd
man/make.cellexalvr.heatmap.Rd
man/make.cellexalvr.heatmap.list.Rd
man/make.cellexalvr.network.Rd
man/mouse.tfs.Rd
man/onlyGOIs.Rd
man/plotAllMDS.Rd
man/print-methods.Rd
man/reduceTo-methods.Rd
man/renew-methods.Rd
man/reorder.genes-methods.Rd
man/reorder.samples-methods.Rd
man/run.ddrtree.Rd
man/set.specie.Rd
man/seurat2cellexalvr.Rd
man/useInbuiltGOIlists-methods.Rd
man/userGrouping.Rd
tests/testthat.R
tests/testthat/.gitignore
tests/testthat/data/.gitignore
tests/testthat/data/cellexalObj.RData
tests/testthat/data/cellexalObj_withGroupings.RData
tests/testthat/data/selection0.txt
tests/testthat/data/selection1.txt
tests/testthat/data/selection2.txt
tests/testthat/test_01_CellexalvrObj.r
tests/testthat/test_02_Networks.R
tests/testthat/test_03_save_load.R
