Man pages for shibiaowan/SHARP
hyperfast and accurate single-cell RNA-Seq data clustering
| ARI | Calculate the adjusted rand index (ARI), including 5... |
| cfun | Combine results which may contain NULL or sparse matrices |
| getA | Obtain the co-location matrix |
| gethclust | hierarchical clustering with number of clusters determined... |
| get_marker_genes | Get marker genes for each cluster |
| get_marker_genes_unlimited | Get marker genes of each cluster for huge-size single-cell... |
| get_marker_genes_unlimited2 | Get marker genes of each cluster for huge-size single-cell... |
| get_opt_hclust | get the optimal hierarchical clustering results with the... |
| get_percluster_exp | Get cluster-specific expression matrix |
| getrowColor | hierarchical clustering with number of clusters determined... |
| getss | Obtain the co-location matrix |
| plot_markers | Plot marker genes |
| ranM | Prepare a random matrix |
| ranM2 | Prepare a random matrix |
| RPmat | Obtain a random matrix and its related information |
| run_Mtimes_SHARP | Run multiple-times SHARP for single-cell RNA data clustering |
| SHARP | Run SHARP for single-cell RNA data clustering |
| SHARP_fpart | Run SHARP for clustering single-cell RNA data whose size... |
| SHARP_large | Run SHARP for large-size (by default, >= 5000) single-cell... |
| SHARP_small | Run SHARP for small-size (< 5000) single-cell RNA datasets |
| SHARP_unlimited | Run SHARP for clustering single-cell RNA data whose size... |
| SHARP_unlimited2 | Run SHARP for clustering single-cell RNA data whose size... |
| SHARP_unlimited3 | Run SHARP for clustering single-cell RNA data whose size... |
| sMetaC | similarity-based ensemble meta-clustering |
| testlog | Test if log-transformation is necessary. |
| visualization_SHARP | SHARP visualization |
| wMetaC | weighted ensemble clustering |
